Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01778.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3127
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31


Found at i:99 original size:23 final size:23

Alignment explanation


    Indices: 58--103  Score: 67
    Period size: 23  Copynumber: 2.0  Consensus size: 23

         48 AGGTATAGTA

                          *        
         58 AAATCAAATTTCTTTTTTTTTTT
          1 AAATCAAATTTCTTATTTTTTTT

                                    
         81 AAATCTAAATTT-TTATTTTTTTT
          1 AAATC-AAATTTCTTATTTTTTTT

        104 GCTTTCCGGC


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  23   15  0.71
  24    6  0.29

ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65


Consensus pattern (23 bp):   
AAATCAAATTTCTTATTTTTTTT

Found at i:138 original size:6 final size:6

Alignment explanation


    Indices: 127--151  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        117 GTTTCTTTCC

                                         
        127 CCCTCA CCCTCA CCCTCA CCCTCA C
          1 CCCTCA CCCTCA CCCTCA CCCTCA C

        152 GCTCGCTTTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.16, C:0.68, G:0.00, T:0.16


Consensus pattern (6 bp):   
CCCTCA

Done.