Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01814.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1077
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39


Found at i:352 original size:6 final size:6

Alignment explanation


    Indices: 341--365  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        331 TAGGATCATT

                                         
        341 TTAGGC TTAGGC TTAGGC TTAGGC T
          1 TTAGGC TTAGGC TTAGGC TTAGGC T

        366 GTTTGTTTTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.16, C:0.16, G:0.32, T:0.36


Consensus pattern (6 bp):   
TTAGGC

Done.