Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01825.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2384
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33


Found at i:494 original size:120 final size:120

Alignment explanation


    Indices: 354--594  Score: 482
    Period size: 120  Copynumber: 2.0  Consensus size: 120

        344 AAAAAAAAGT

                                                                             
        354 AAGTTTTTTAAATCTGGGTTTGTCTTTTTTAAGCTTTAGTTTTGCTTTTGGTAAGCTTGGTGGAG
          1 AAGTTTTTTAAATCTGGGTTTGTCTTTTTTAAGCTTTAGTTTTGCTTTTGGTAAGCTTGGTGGAG

                                                                   
        419 CTGTTGTTTCTGGCTAAGGTTTTTGTTATTATCTTAATTCAAAAGTTTGGTTACA
         66 CTGTTGTTTCTGGCTAAGGTTTTTGTTATTATCTTAATTCAAAAGTTTGGTTACA

                                                                             
        474 AAGTTTTTTAAATCTGGGTTTGTCTTTTTTAAGCTTTAGTTTTGCTTTTGGTAAGCTTGGTGGAG
          1 AAGTTTTTTAAATCTGGGTTTGTCTTTTTTAAGCTTTAGTTTTGCTTTTGGTAAGCTTGGTGGAG

                                                                   
        539 CTGTTGTTTCTGGCTAAGGTTTTTGTTATTATCTTAATTCAAAAGTTTGGTTACA
         66 CTGTTGTTTCTGGCTAAGGTTTTTGTTATTATCTTAATTCAAAAGTTTGGTTACA

             
        594 A
          1 A

        595 GGGAAGTTTA


Statistics
Matches: 121,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 120  121  1.00

ACGTcount: A:0.20, C:0.09, G:0.22, T:0.50


Consensus pattern (120 bp):   
AAGTTTTTTAAATCTGGGTTTGTCTTTTTTAAGCTTTAGTTTTGCTTTTGGTAAGCTTGGTGGAG
CTGTTGTTTCTGGCTAAGGTTTTTGTTATTATCTTAATTCAAAAGTTTGGTTACA
Done.