Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01827.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 847

Length: 1413
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36


Found at i:1325 original size:16 final size:16

Alignment explanation


    Indices: 1304--1361  Score: 55
    Period size: 16  Copynumber: 3.4  Consensus size: 16

       1294 GTAATAGATG

                            
       1304 TAATTTTATCATATAT
          1 TAATTTTATCATATAT

                             *  
       1320 TAATTTTTGAGATCA-AAAT
          1 TAA-TTTT---ATCATATAT

                             
       1339 GTAATTTTATCATATAT
          1 -TAATTTTATCATATAT

                  
       1356 TAATTT
          1 TAATTT

       1362 ATAATTCCAT


Statistics
Matches: 34,  Mismatches: 2, Indels: 12
        0.71            0.04        0.25

Matches are distributed among these distances:
  16   13  0.38
  17    7  0.21
  19    7  0.21
  20    7  0.21

ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52


Consensus pattern (16 bp):   
TAATTTTATCATATAT
Done.