Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01839.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3120
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35


Found at i:1878 original size:15 final size:14

Alignment explanation


    Indices: 1858--1888  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       1848 TATTATTTTT

                           
       1858 AATATATATGATTAA
          1 AATATATATGA-TAA

                          
       1873 AATATATATGATAA
          1 AATATATATGATAA

              
       1887 AA
          1 AA

       1889 GCAAGAGAGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    5  0.31
  15   11  0.69

ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35


Consensus pattern (14 bp):   
AATATATATGATAA
Done.