Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01840.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3219
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34


Found at i:2002 original size:36 final size:37

Alignment explanation


    Indices: 1944--2017  Score: 105
    Period size: 36  Copynumber: 2.0  Consensus size: 37

       1934 TAGAGCAGTA

                                   *             
       1944 AATAGTGGGGGGGTTTTCTTCCATGAAAAGATCAATC
          1 AATAGTGGGGGGGTTTTCTTCCACGAAAAGATCAATC

                        *    *              *    
       1981 AATAGT-GGGGGTTTTTTTTCCACGAAAAGATTAATC
          1 AATAGTGGGGGGGTTTTCTTCCACGAAAAGATCAATC

             
       2017 A
          1 A

       2018 TACCTGTAGT


Statistics
Matches: 33,  Mismatches: 4, Indels: 1
        0.87            0.11        0.03

Matches are distributed among these distances:
  36   27  0.82
  37    6  0.18

ACGTcount: A:0.31, C:0.12, G:0.24, T:0.32


Consensus pattern (37 bp):   
AATAGTGGGGGGGTTTTCTTCCACGAAAAGATCAATC
Done.