Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01849.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 773

Length: 1289
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29


Found at i:1098 original size:18 final size:18

Alignment explanation


    Indices: 1075--1111  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1065 CTCTGCTCTC

                              
       1075 GATTGTTTTCCAGTTATA
          1 GATTGTTTTCCAGTTATA

                              
       1093 GATTGTTTTCCAGTTATA
          1 GATTGTTTTCCAGTTATA

             
       1111 G
          1 G

       1112 TTTTGCGATG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.22, C:0.11, G:0.19, T:0.49


Consensus pattern (18 bp):   
GATTGTTTTCCAGTTATA
Done.