Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01860.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 402

Length: 670
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36


Found at i:160 original size:73 final size:73

Alignment explanation


    Indices: 43--307  Score: 284
    Period size: 73  Copynumber: 3.6  Consensus size: 73

         33 AGTTTTCCCG

                     *                    *    *  *                       *  
         43 AAATCCCTACGTTCTTTTCCCAAATCCCTTTCTTTCTTCCCCAATTTCTTTTCCCCAAATCAATT
          1 AAATCCCTAAG-T-TTTTCCCAAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAGTT

                      
        108 CCCCTCCCTA
         64 CCCCTCCCTA

                   *            *                                           *
        118 AAATCCCCAAGTTTTTCCTCTAAT-CCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAGTTA
          1 AAATCCCTAAGTTTTTCC-CAAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAGTTC

                   * 
        182 CCCTCCCCA
         65 CCCTCCCTA

            *                *           *             *       *             
        191 TAATCCCTAAGCTTTTTGCCAAATCCCTTTC-TTTTTTCCCAACTTCTTTTACCCAAATCAGTTC
          1 AAATCCCTAAG-TTTTTCCCAAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAGTTC

            *        *
        255 TCCT-CCTCG
         65 CCCTCCCT-A

                      *                *         *      
        264 AAATCCCTAACTTTTTCCCCAAATCCCCTCCTTTTTTCCCCAAT
          1 AAATCCCTAAGTTTTT-CCCAAATCCCTTCCTTTTTTTCCCAAT

        308 GTTTGTTGCA


Statistics
Matches: 157,  Mismatches: 27, Indels: 13
        0.80            0.14        0.07

Matches are distributed among these distances:
  72    7  0.04
  73  115  0.73
  74   26  0.17
  75    9  0.06

ACGTcount: A:0.20, C:0.38, G:0.03, T:0.39


Consensus pattern (73 bp):   
AAATCCCTAAGTTTTTCCCAAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAGTTCC
CCTCCCTA
Done.