Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01885.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2059
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31


Found at i:1963 original size:7 final size:7

Alignment explanation


    Indices: 1951--1975  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       1941 CGAGTCTTTC

                   
       1951 TTTTCTT
          1 TTTTCTT

                   
       1958 TTTTCTT
          1 TTTTCTT

                   
       1965 TTTTCTT
          1 TTTTCTT

                
       1972 TTTT
          1 TTTT

       1976 ATATATTGCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (7 bp):   
TTTTCTT
Done.