Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01899.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2988
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33


Found at i:2530 original size:15 final size:15

Alignment explanation


    Indices: 2510--2540  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2500 GATGAAGAAT

                           
       2510 ATTATTACGATGAAG
          1 ATTATTACGATGAAG

                   *       
       2525 ATTATTATGATGAAG
          1 ATTATTACGATGAAG

             
       2540 A
          1 A

       2541 CGACGACGAC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.42, C:0.03, G:0.19, T:0.35


Consensus pattern (15 bp):   
ATTATTACGATGAAG

Found at i:2612 original size:18 final size:18

Alignment explanation


    Indices: 2591--2625  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       2581 GAATATAATG

                      *       
       2591 ATGAGAAAGATAAGAAAA
          1 ATGAGAAAGAAAAGAAAA

                             
       2609 ATGAGAAAGAAAAGAAA
          1 ATGAGAAAGAAAAGAAA

       2626 TAAAATTGTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.69, C:0.00, G:0.23, T:0.09


Consensus pattern (18 bp):   
ATGAGAAAGAAAAGAAAA
Done.