Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01701.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 753

Length: 1256
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27


Found at i:1044 original size:17 final size:18

Alignment explanation


    Indices: 1022--1060  Score: 55
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1012 ATTAACTATA

                               
       1022 AAAAAAAT-GA-AACAAAG
          1 AAAAAAATGGAGAA-AAAG

                              
       1039 AAAAAAATGGAGAAAAAG
          1 AAAAAAATGGAGAAAAAG

                
       1057 AAAA
          1 AAAA

       1061 TCAAAGAAAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  17    8  0.40
  18   10  0.50
  19    2  0.10

ACGTcount: A:0.77, C:0.03, G:0.15, T:0.05


Consensus pattern (18 bp):   
AAAAAAATGGAGAAAAAG

Done.