Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01916.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2133
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31


Found at i:244 original size:11 final size:11

Alignment explanation


    Indices: 228--259  Score: 50
    Period size: 10  Copynumber: 3.1  Consensus size: 11

        218 TTAACCCTTT

                       
        228 TTTTTTATATC
          1 TTTTTTATATC

                       
        239 -TTTTT-TATC
          1 TTTTTTATATC

                       
        248 TTTTTTATATC
          1 TTTTTTATATC

             
        259 T
          1 T

        260 CTCATTTCAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
   9    4  0.21
  10   10  0.53
  11    5  0.26

ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75


Consensus pattern (11 bp):   
TTTTTTATATC
Done.