Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01918.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 679

Length: 1133
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34


Found at i:760 original size:27 final size:27

Alignment explanation


    Indices: 719--858  Score: 183
    Period size: 27  Copynumber: 5.2  Consensus size: 27

        709 GAGGAAGCGT

                      *                
        719 TCTGGTGGCTATGCCACAAATATCTGA
          1 TCTGGTGGCTCTGCCACAAATATCTGA

                                       
        746 TCTGGTGGCTCTGCCACAAATATCTGA
          1 TCTGGTGGCTCTGCCACAAATATCTGA

                              *       *
        773 TCTGGTGGCTCTGCCACATATATCTGT
          1 TCTGGTGGCTCTGCCACAAATATCTGA

                             * *        
        800 TCTGGTGGCTCTGCCACGATTATCTGTA
          1 TCTGGTGGCTCTGCCACAAATATCTG-A

                   *     *     *      *
        828 TCTGGTGACTCTGTCAC-ATTATCTGT
          1 TCTGGTGGCTCTGCCACAAATATCTGA

                 
        854 TCTGG
          1 TCTGG

        859 CAGCCATGCT


Statistics
Matches: 102,  Mismatches: 10, Indels: 3
        0.89            0.09        0.03

Matches are distributed among these distances:
  26    5  0.05
  27   82  0.80
  28   15  0.15

ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35


Consensus pattern (27 bp):   
TCTGGTGGCTCTGCCACAAATATCTGA

Found at i:804 original size:54 final size:55

Alignment explanation


    Indices: 719--858  Score: 203
    Period size: 54  Copynumber: 2.6  Consensus size: 55

        709 GAGGAAGCGT

                      *       *       *                            
        719 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
          1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA

                                                        * *        
        773 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
          1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA

                   *     *                  
        828 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
          1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG

        859 CAGCCATGCT


Statistics
Matches: 78,  Mismatches: 7, Indels: 2
        0.90            0.08        0.02

Matches are distributed among these distances:
  54   60  0.77
  55   18  0.23

ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35


Consensus pattern (55 bp):   
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Done.