Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01936.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1699
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28


Found at i:22 original size:6 final size:6

Alignment explanation


    Indices: 11--47  Score: 65
    Period size: 6  Copynumber: 6.2  Consensus size: 6

          1 CCCACTACTC

                           *                           
         11 CCTCTT CCTCTT CATCTT CCTCTT CCTCTT CCTCTT C
          1 CCTCTT CCTCTT CCTCTT CCTCTT CCTCTT CCTCTT C

         48 TTCACTTCAT


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.03, C:0.49, G:0.00, T:0.49


Consensus pattern (6 bp):   
CCTCTT

Done.