Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01940.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3517
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39


Found at i:137 original size:18 final size:18

Alignment explanation


    Indices: 114--157  Score: 54
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        104 CCCAAAACAG

                          *   *
        114 ATTTCCCC-AATTCTCTAC
          1 ATTTCCCCTAA-TCCCTAA

                              
        132 ATTTCCCCTAATCCCTAA
          1 ATTTCCCCTAATCCCTAA

                    
        150 ATTTCCCC
          1 ATTTCCCC

        158 CAAAATCCCT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  18   21  0.91
  19    2  0.09

ACGTcount: A:0.23, C:0.41, G:0.00, T:0.36


Consensus pattern (18 bp):   
ATTTCCCCTAATCCCTAA
Done.