Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01945.N5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 835

Length: 1392
ACGTcount: A:0.23, C:0.25, G:0.32, T:0.20


Found at i:551 original size:276 final size:277

Alignment explanation


    Indices: 57--613  Score: 936
    Period size: 276  Copynumber: 2.0  Consensus size: 277

         47 GATAGCGCGT

                                                       *            *      * 
         57 TCAGCGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACTGGGACGCCGCGGCTGACGGTA
          1 TCAGCGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCCGCGGATGACGGCA

                                                                             
        122 ACGTTAGGAAGTCCGGAGACGTCAGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCC
         66 ACGTTAGGAAGTCCGGAGACGTCAGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCC

                    *           *                                       *    
        187 TGCCCACCCTGGAAACGGCTTAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGC
        131 TGCCCACCATGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACATCGC

                                    *            *                           
        252 GTGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCTGGAGGACCGAGTGCCGTCCGCACCCGG
        196 GTGGTGTCCGGTGCGCCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCACCCGG

                             
        317 TCGTACTCATAACCACA
        261 TCGTACTCATAACCACA

                                                               *             
        334 TCAGCGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCGGCGGATGACGGCA
          1 TCAGCGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCCGCGGATGACGGCA

                    *   **         *          *                              
        399 ACG-TAGGGAGTTTGGAGACGTCGGCGGGGGCCTTGGGAAGAGTTATCTTTTCTGTTTAACGGCC
         66 ACGTTAGGAAGTCCGGAGACGTCAGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCC

                                                    *                       *
        463 TGCCCACCATGGAAACGGCTCAGCCGGAGGTAGGGTCCAGTGGCCGGAAGAGCACCGCACATCGT
        131 TGCCCACCATGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACATCGC

                    *                                                  *     
        528 GTGGTGTCTGGTGCGCCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCGCCCGG
        196 GTGGTGTCCGGTGCGCCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCACCCGG

                          *  
        593 TCGTACTCATAACCGCA
        261 TCGTACTCATAACCACA

                
        610 TCAG
          1 TCAG

        614 GTCTCCAAGG


Statistics
Matches: 261,  Mismatches: 19, Indels: 1
        0.93            0.07        0.00

Matches are distributed among these distances:
 276  197  0.75
 277   64  0.25

ACGTcount: A:0.20, C:0.28, G:0.34, T:0.18


Consensus pattern (277 bp):   
TCAGCGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCCGCGGATGACGGCA
ACGTTAGGAAGTCCGGAGACGTCAGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCC
TGCCCACCATGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACATCGC
GTGGTGTCCGGTGCGCCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCACCCGG
TCGTACTCATAACCACA
Done.