Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01945.N8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 799

Length: 1332
ACGTcount: A:0.23, C:0.25, G:0.32, T:0.20


Found at i:499 original size:276 final size:277

Alignment explanation


    Indices: 1--553  Score: 928
    Period size: 276  Copynumber: 2.0  Consensus size: 277

                                                   *            *      *     
          1 CGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACTGGGACGCCGCGGCTGACGGTAACGT
          1 CGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCCGCGGATGACGGCAACGT

                                                                             
         66 TAGGAAGTCCGGAGACGTCAGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCC
         66 TAGGAAGTCCGGAGACGTCAGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCC

                *           *                                       *        
        131 CACCCTGGAAACGGCTTAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGTGG
        131 CACCATGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACATCGCGTGG

                                *            *                               
        196 TGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCTGGAGGACCGAGTGCCGTCCGCACCCGGTCGT
        196 TGTCCGGTGCGCCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCACCCGGTCGT

                             
        261 ACTCATAACCACATCAG
        261 ACTCATAACCACATCAG

                                                           *                 
        278 CGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCGGCGGATGACGGCAACG-
          1 CGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCCGCGGATGACGGCAACGT

                *   **         *          *                                  
        342 TAGGGAGTTTGGAGACGTCGGCGGGGGCCTTGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCC
         66 TAGGAAGTCCGGAGACGTCAGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCC

                                                *                       *    
        407 CACCATGGAAACGGCTCAGCCGGAGGTAGGGTCCAGTGGCCGGAAGAGCACCGCACATCGTGTGG
        131 CACCATGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACATCGCGTGG

                *                                                  *         
        472 TGTCTGGTGCGCCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCGCCCGGTCGT
        196 TGTCCGGTGCGCCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCACCCGGTCGT

                      *      
        537 ACTCATAACCGCATCAG
        261 ACTCATAACCACATCAG

        554 GTCTCCAAGG


Statistics
Matches: 257,  Mismatches: 19, Indels: 1
        0.93            0.07        0.00

Matches are distributed among these distances:
 276  197  0.77
 277   60  0.23

ACGTcount: A:0.20, C:0.28, G:0.34, T:0.18


Consensus pattern (277 bp):   
CGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCCGCGGATGACGGCAACGT
TAGGAAGTCCGGAGACGTCAGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCC
CACCATGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACATCGCGTGG
TGTCCGGTGCGCCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCACCCGGTCGT
ACTCATAACCACATCAG
Done.