Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01944.N25

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 837

Length: 1395
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22


Found at i:1138 original size:323 final size:323

Alignment explanation


    Indices: 550--1194  Score: 1209
    Period size: 323  Copynumber: 2.0  Consensus size: 323

        540 AGGGGAATCC

                                                              *     * *      
        550 GACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTACGGATGCTCACGGAATGTGATTTCTGC
          1 GACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTACGGATGCTCACGCAATGTAAATTCTGC

                                                                             
        615 CCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGCTAAACGGCGGGAGTAACTAT
         66 CCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGCTAAACGGCGGGAGTAACTAT

                                                                             
        680 GACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATAAATGGATTAACGAG
        131 GACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATAAATGGATTAACGAG

                                                                           * 
        745 ATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCA
        196 ATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATAA

                                                                           
        810 GCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGG
        261 GCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGG

                                                 **                          
        873 GACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGTGGATGCTCACGCAATGTAAATTCTGC
          1 GACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTACGGATGCTCACGCAATGTAAATTCTGC

                                                        *                    
        938 CCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTAT
         66 CCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGCTAAACGGCGGGAGTAACTAT

                                                              *              
       1003 GACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAG
        131 GACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATAAATGGATTAACGAG

                         *                                                   
       1068 ATTCCCACTGTCCGTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATAA
        196 ATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATAA

                                                                          
       1133 GCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGG
        261 GCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGG

       1195 TGTAGGATAA


Statistics
Matches: 313,  Mismatches: 9, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 323  313  1.00

ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23


Consensus pattern (323 bp):   
GACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTACGGATGCTCACGCAATGTAAATTCTGC
CCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGCTAAACGGCGGGAGTAACTAT
GACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATAAATGGATTAACGAG
ATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATAA
GCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGG
Done.