Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01945.N9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1328
ACGTcount: A:0.23, C:0.25, G:0.32, T:0.20


Found at i:495 original size:276 final size:277

Alignment explanation


    Indices: 1--549  Score: 920
    Period size: 276  Copynumber: 2.0  Consensus size: 277

                                               *            *      *         
          1 AGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACTGGGACGCCGCGGCTGACGGTAACGTTAGG
          1 AGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCCGCGGATGACGGCAACGTTAGG

                                                                             
         66 AAGTCCGGAGACGTCAGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCCCACC
         66 AAGTCCGGAGACGTCAGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCCCACC

            *           *                                       *            
        131 CTGGAAACGGCTTAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGTGGTGTC
        131 ATGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACATCGCGTGGTGTC

                            *            *                                   
        196 CGGTGCGCCCCCGGCGGCCCTTGAAAATCTGGAGGACCGAGTGCCGTCCGCACCCGGTCGTACTC
        196 CGGTGCGCCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCACCCGGTCGTACTC

                             
        261 ATAACCACATCAGCGCG
        261 ATAACCACATCAGCGCG

                                                       *                     
        278 AGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCGGCGGATGACGGCAACG-TAGG
          1 AGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCCGCGGATGACGGCAACGTTAGG

            *   **         *          *                                      
        342 GAGTTTGGAGACGTCGGCGGGGGCCTTGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCCCACC
         66 AAGTCCGGAGACGTCAGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCCCACC

                                            *                       *        
        407 ATGGAAACGGCTCAGCCGGAGGTAGGGTCCAGTGGCCGGAAGAGCACCGCACATCGTGTGGTGTC
        131 ATGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACATCGCGTGGTGTC

            *                                                  *             
        472 TGGTGCGCCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCGCCCGGTCGTACTC
        196 CGGTGCGCCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCACCCGGTCGTACTC

                  *      
        537 ATAACCGCATCAG
        261 ATAACCACATCAG

        550 GTCTCCAAGG


Statistics
Matches: 253,  Mismatches: 19, Indels: 1
        0.93            0.07        0.00

Matches are distributed among these distances:
 276  197  0.78
 277   56  0.22

ACGTcount: A:0.20, C:0.28, G:0.34, T:0.18


Consensus pattern (277 bp):   
AGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGCCGCGGATGACGGCAACGTTAGG
AAGTCCGGAGACGTCAGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACGGCCTGCCCACC
ATGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACATCGCGTGGTGTC
CGGTGCGCCCCCGGCGACCCTTGAAAATCCGGAGGACCGAGTGCCGTCCGCACCCGGTCGTACTC
ATAACCACATCAGCGCG
Done.