Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01944.N40

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 785

Length: 1309
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22


Found at i:1052 original size:323 final size:323

Alignment explanation


    Indices: 464--1108  Score: 1209
    Period size: 323  Copynumber: 2.0  Consensus size: 323

        454 AGGGGAATCC

                                                              *     * *      
        464 GACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTACGGATGCTCACGGAATGTGATTTCTGC
          1 GACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTACGGATGCTCACGCAATGTAAATTCTGC

                                                                             
        529 CCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGCTAAACGGCGGGAGTAACTAT
         66 CCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGCTAAACGGCGGGAGTAACTAT

                                                                             
        594 GACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATAAATGGATTAACGAG
        131 GACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATAAATGGATTAACGAG

                                                                           * 
        659 ATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCA
        196 ATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATAA

                                                                           
        724 GCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGG
        261 GCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGG

                                                 **                          
        787 GACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGTGGATGCTCACGCAATGTAAATTCTGC
          1 GACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTACGGATGCTCACGCAATGTAAATTCTGC

                                                        *                    
        852 CCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTAT
         66 CCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGCTAAACGGCGGGAGTAACTAT

                                                              *              
        917 GACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAG
        131 GACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATAAATGGATTAACGAG

                         *                                                   
        982 ATTCCCACTGTCCGTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATAA
        196 ATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATAA

                                                                          
       1047 GCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGG
        261 GCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGG

       1109 TGTAGGATAA


Statistics
Matches: 313,  Mismatches: 9, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 323  313  1.00

ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23


Consensus pattern (323 bp):   
GACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTACGGATGCTCACGCAATGTAAATTCTGC
CCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGCTAAACGGCGGGAGTAACTAT
GACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATAAATGGATTAACGAG
ATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATAA
GCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGG
Done.