Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga07g01946.N2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2365
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Found at i:1200 original size:178 final size:178
Alignment explanation
Indices: 901--1256 Score: 712
Period size: 178 Copynumber: 2.0 Consensus size: 178
891 CGTCCCTGCC
901 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
1 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
966 ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
66 ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
1031 AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
131 AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
1079 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
1 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
1144 ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
66 ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
1209 AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
131 AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
1257 TCGAAACCTG
Statistics
Matches: 178, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
178 178 1.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.22
Consensus pattern (178 bp):
CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
Done.