Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga07g01946.N5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1811
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Found at i:646 original size:178 final size:178
Alignment explanation
Indices: 347--702 Score: 712
Period size: 178 Copynumber: 2.0 Consensus size: 178
337 CGTCCCTGCC
347 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
1 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
412 ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
66 ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
477 AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
131 AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
525 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
1 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
590 ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
66 ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
655 AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
131 AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
703 TCGAAACCTG
Statistics
Matches: 178, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
178 178 1.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.22
Consensus pattern (178 bp):
CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
Done.