Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01946.N7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1762
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22


Found at i:597 original size:178 final size:178

Alignment explanation


    Indices: 298--653  Score: 712
    Period size: 178  Copynumber: 2.0  Consensus size: 178

        288 CGTCCCTGCC

                                                                             
        298 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
          1 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG

                                                                             
        363 ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
         66 ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG

                                                            
        428 AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
        131 AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG

                                                                             
        476 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
          1 CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG

                                                                             
        541 ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
         66 ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG

                                                            
        606 AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
        131 AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG

        654 TCGAAACCTG


Statistics
Matches: 178,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 178  178  1.00

ACGTcount: A:0.21, C:0.26, G:0.30, T:0.22


Consensus pattern (178 bp):   
CTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCCCGGCG
ACGTGGGCGGTTCGCTGCCCGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGG
AGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG
Done.