Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01967.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 384

Length: 641
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27


Found at i:297 original size:27 final size:27

Alignment explanation


    Indices: 267--346  Score: 151
    Period size: 27  Copynumber: 3.0  Consensus size: 27

        257 TGGAGGTTAT

                                       
        267 GGAGGATACGGAGGGCGCGGTGGGTAC
          1 GGAGGATACGGAGGGCGCGGTGGGTAC

                             *         
        294 GGAGGATACGGAGGGCGTGGTGGGTAC
          1 GGAGGATACGGAGGGCGCGGTGGGTAC

                                      
        321 GGAGGATACGGAGGGCGCGGTGGGTA
          1 GGAGGATACGGAGGGCGCGGTGGGTA

        347 TGGTGGTGGT


Statistics
Matches: 51,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   51  1.00

ACGTcount: A:0.19, C:0.12, G:0.56, T:0.12


Consensus pattern (27 bp):   
GGAGGATACGGAGGGCGCGGTGGGTAC
Done.