Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01970.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2233
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:1411 original size:92 final size:89

Alignment explanation


    Indices: 1287--1459  Score: 285
    Period size: 92  Copynumber: 1.9  Consensus size: 89

       1277 TTTTCTTAGC

                          *          *                                       
       1287 CTTTATTTACTTCTGTTAGGATTGAGCTCTGATTAGAGATTTTGTTTTGGGTTTAATTGTTGATT
          1 CTTTATTTACTTCTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAA---TT-ATT

                                        
       1352 CATCTTTTTTCTATTATTTCTTCTTCTT
         62 CATCTTTTTTCTATTATTTCTTCTTCTT

                                                                             
       1380 CTTTATTTACTT-TATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTATTCATC
          1 CTTTATTTACTTCTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTATTCATC

                            
       1444 TTTTTTCTATTATTTC
         66 TTTTTTCTATTATTTC

       1460 CTGGCAGCTC


Statistics
Matches: 78,  Mismatches: 2, Indels: 5
        0.92            0.02        0.06

Matches are distributed among these distances:
  88   23  0.29
  89    2  0.03
  92   41  0.53
  93   12  0.15

ACGTcount: A:0.18, C:0.11, G:0.14, T:0.57


Consensus pattern (89 bp):   
CTTTATTTACTTCTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTATTCATC
TTTTTTCTATTATTTCTTCTTCTT
Done.