Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01709.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 480

Length: 800
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27


Found at i:462 original size:7 final size:7

Alignment explanation


    Indices: 450--477  Score: 56
    Period size: 7  Copynumber: 4.0  Consensus size: 7

        440 AGAAATAGGC

                   
        450 GAGCACT
          1 GAGCACT

                   
        457 GAGCACT
          1 GAGCACT

                   
        464 GAGCACT
          1 GAGCACT

                   
        471 GAGCACT
          1 GAGCACT

        478 TATGGCTGAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.29, C:0.29, G:0.29, T:0.14


Consensus pattern (7 bp):   
GAGCACT

Done.