Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01984.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 898

Length: 1498
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29


Found at i:1234 original size:12 final size:12

Alignment explanation


    Indices: 1198--1234  Score: 56
    Period size: 12  Copynumber: 3.1  Consensus size: 12

       1188 CAGATAAAGG

                        
       1198 TAGTGGAATCCA
          1 TAGTGGAATCCA

            *       *   
       1210 CAGTGGAACCCA
          1 TAGTGGAATCCA

                        
       1222 TAGTGGAATCCA
          1 TAGTGGAATCCA

             
       1234 T
          1 T

       1235 GGCTAAAAAA


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22


Consensus pattern (12 bp):   
TAGTGGAATCCA
Done.