Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01709.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1711
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26


Found at i:1373 original size:7 final size:7

Alignment explanation


    Indices: 1361--1388  Score: 56
    Period size: 7  Copynumber: 4.0  Consensus size: 7

       1351 AGAAATAGGC

                   
       1361 GAGCACT
          1 GAGCACT

                   
       1368 GAGCACT
          1 GAGCACT

                   
       1375 GAGCACT
          1 GAGCACT

                   
       1382 GAGCACT
          1 GAGCACT

       1389 TATGGCTGAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.29, C:0.29, G:0.29, T:0.14


Consensus pattern (7 bp):   
GAGCACT

Done.