Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01986.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3866
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32


Found at i:2532 original size:60 final size:60

Alignment explanation


    Indices: 2456--2603  Score: 165
    Period size: 60  Copynumber: 2.5  Consensus size: 60

       2446 ACAAGTTTGT

                *            *               *   *        *              
       2456 TTTAGGACTGCTTATTATGTTTGGCTGATGTGGCTATCTGCATGACTA-TTTCAAGGAAGA
          1 TTTACGACTGCTTATTAAGTTTGGCTGATGTGGATATATGCATGA-GAGTTTCAAGGAAGA

                   *           *                     *             *    
       2516 TTTACGAGTGCTTATTAAGCTTGGCTGATGTGGATATATGCTTGAGAGTTTCAAGTAAGA
          1 TTTACGACTGCTTATTAAGTTTGGCTGATGTGGATATATGCATGAGAGTTTCAAGGAAGA

                *    *       *           
       2576 TTTAGGACTACTTATT-GGTTTGGCTGAT
          1 TTTACGACTGCTTATTAAGTTTGGCTGAT

       2604 CTTGGTATCT


Statistics
Matches: 73,  Mismatches: 14, Indels: 3
        0.81            0.16        0.03

Matches are distributed among these distances:
  59   11  0.15
  60   62  0.85

ACGTcount: A:0.24, C:0.11, G:0.26, T:0.39


Consensus pattern (60 bp):   
TTTACGACTGCTTATTAAGTTTGGCTGATGTGGATATATGCATGAGAGTTTCAAGGAAGA
Done.