Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga07g01988.P1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7923
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Found at i:227 original size:12 final size:12
Alignment explanation
Indices: 210--240 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
200 ACTCGGGGAA
210 GAGGCCGTGGTC
1 GAGGCCGTGGTC
222 GAGGCCGTGGTC
1 GAGGCCGTGGTC
234 GAGGCCG
1 GAGGCCG
241 AGGTAGTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:5100 original size:26 final size:26
Alignment explanation
Indices: 5062--5197 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
5052 TGATACAAAT
*
5062 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
5088 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
5114 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTCA
**
5140 TGATAATGTATTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
5166 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
5192 TGATAA
1 TGATAA
5198 GAATTTCATG
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 101 1.00
ACGTcount: A:0.33, C:0.03, G:0.24, T:0.40
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Done.