Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01992.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3210
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:646 original size:99 final size:99

Alignment explanation


    Indices: 460--680  Score: 268
    Period size: 99  Copynumber: 2.3  Consensus size: 99

        450 AAGAGCTTTC

                                             *     *                  *      
        460 CATTGAAGAAGATGGATCTGTTCCCAAATCGTCTTCAAATTCTGGCTCAGCTGACTGCTGTACGA
          1 CATTGAAGAAGATGGATCTGTTCCCAAATCGTCGTCAAACTCTGGCTCAGCTGACTGCAGTACGA

            *                *                
        525 TTGACATGGTTCCAACCGAAATAAAGGAGTTTTT
         66 ATGACATGGTTCCAACCAAAATAAAGGAGTTTTT

                                    *  *          *                          
        559 CATTGAAGAAGATGGATCTGTTCCGAAGTCGTCGTCAACCTCTGGCTCAGCTGACTGCAGTACGA
          1 CATTGAAGAAGATGGATCTGTTCCCAAATCGTCGTCAAACTCTGGCTCAGCTGACTGCAGTACGA

                *   *  *  *              *    
        624 ATGATATGTTTGCACCCAAAAT--A-GAGGTTTT
         66 ATGACATGGTTCCAACCAAAATAAAGGAGTTTTT

             ****                     
        655 CCCCAAAGAAGATGGATCTGTTCCCA
          1 CATTGAAGAAGATGGATCTGTTCCCA

        681 GGTCAGCTGA


Statistics
Matches: 104,  Mismatches: 18, Indels: 3
        0.83            0.14        0.02

Matches are distributed among these distances:
  96   28  0.27
  97    1  0.01
  99   75  0.72

ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28


Consensus pattern (99 bp):   
CATTGAAGAAGATGGATCTGTTCCCAAATCGTCGTCAAACTCTGGCTCAGCTGACTGCAGTACGA
ATGACATGGTTCCAACCAAAATAAAGGAGTTTTT
Done.