Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g01997.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 534

Length: 890
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34


Found at i:776 original size:18 final size:17

Alignment explanation


    Indices: 753--789  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 17

        743 GGAATTTGGA

                              
        753 TTTTTTATTTGTGTGTTT
          1 TTTTTTATTTGTG-GTTT

                      *      
        771 TTTTTTATTTTTGGTTT
          1 TTTTTTATTTGTGGTTT

              
        788 TT
          1 TT

        790 AATTTCTATT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  17    6  0.33
  18   12  0.67

ACGTcount: A:0.05, C:0.00, G:0.14, T:0.81


Consensus pattern (17 bp):   
TTTTTTATTTGTGGTTT
Done.