Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02009.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1894
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33


Found at i:650 original size:27 final size:27

Alignment explanation


    Indices: 609--722  Score: 131
    Period size: 27  Copynumber: 4.2  Consensus size: 27

        599 GAGGAAGCGT

                      *                
        609 TCTGGTGGCTATGCCACAAATATCTGA
          1 TCTGGTGGCTCTGCCACAAATATCTGA

                              *       *
        636 TCTGGTGGCTCTGCCACATATATCTGT
          1 TCTGGTGGCTCTGCCACAAATATCTGA

                             * *        
        663 TCTGGTGGCTCTGCCACGATTATCTGTA
          1 TCTGGTGGCTCTGCCACAAATATCTG-A

                   *     *     *      *
        691 TCTGGTGACTCTGTCAC-ATTATCTGT
          1 TCTGGTGGCTCTGCCACAAATATCTGA

                  
        717 TCTGGT
          1 TCTGGT

        723 AGCCATGCTG


Statistics
Matches: 76,  Mismatches: 10, Indels: 3
        0.85            0.11        0.03

Matches are distributed among these distances:
  26    6  0.08
  27   55  0.72
  28   15  0.20

ACGTcount: A:0.17, C:0.24, G:0.23, T:0.37


Consensus pattern (27 bp):   
TCTGGTGGCTCTGCCACAAATATCTGA

Found at i:714 original size:54 final size:54

Alignment explanation


    Indices: 607--722  Score: 171
    Period size: 54  Copynumber: 2.1  Consensus size: 54

        597 TGGAGGAAGC

                                                *                 
        607 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
          1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT

                        *      * *                     *           
        661 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
          1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT

                    
        715 GTTCTGGT
          1 GTTCTGGT

        723 AGCCATGCTG


Statistics
Matches: 56,  Mismatches: 5, Indels: 2
        0.89            0.08        0.03

Matches are distributed among these distances:
  54   38  0.68
  55   18  0.32

ACGTcount: A:0.16, C:0.23, G:0.23, T:0.37


Consensus pattern (54 bp):   
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Done.