Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02020.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 552

Length: 920
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36


Found at i:231 original size:18 final size:18

Alignment explanation


    Indices: 208--251  Score: 88
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        198 TCCCTCTCTT

                              
        208 GTTTTTTTTTTAAAAAAC
          1 GTTTTTTTTTTAAAAAAC

                              
        226 GTTTTTTTTTTAAAAAAC
          1 GTTTTTTTTTTAAAAAAC

                    
        244 GTTTTTTT
          1 GTTTTTTT

        252 AAAAAAATAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   26  1.00

ACGTcount: A:0.27, C:0.05, G:0.07, T:0.61


Consensus pattern (18 bp):   
GTTTTTTTTTTAAAAAAC

Found at i:232 original size:15 final size:16

Alignment explanation


    Indices: 211--257  Score: 69
    Period size: 18  Copynumber: 2.9  Consensus size: 16

        201 CTCTCTTGTT

                            
        211 TTTTTTTTAAAAAACG
          1 TTTTTTTTAAAAAACG

                              
        227 TTTTTTTTTTAAAAAACG
          1 --TTTTTTTTAAAAAACG

                          
        245 -TTTTTTTAAAAAA
          1 TTTTTTTTAAAAAA

        258 ATATTGAAAG


Statistics
Matches: 29,  Mismatches: 0, Indels: 3
        0.91            0.00        0.09

Matches are distributed among these distances:
  15   13  0.45
  18   16  0.55

ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53


Consensus pattern (16 bp):   
TTTTTTTTAAAAAACG

Done.