Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02022.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2148
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:1635 original size:6 final size:6

Alignment explanation


    Indices: 1620--1648  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       1610 TTGTTGGGTG

                                              
       1620 CAAAAA -AAAAA CAAAAA CAAAAA CAAAAA
          1 CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA

       1649 ACCAAACCAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   5    5  0.23
   6   17  0.77

ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00


Consensus pattern (6 bp):   
CAAAAA

Done.