Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02037.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2009
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27


Found at i:1327 original size:132 final size:132

Alignment explanation


    Indices: 1084--1748  Score: 1179
    Period size: 132  Copynumber: 5.0  Consensus size: 132

       1074 GGTTATCAGC

                                                                             
       1084 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
          1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT

                               *                *            *               
       1149 TCACCACATCAGGAAACTTTGGCTGCAGCTGCTGCCTACACGGACTGGCTTGTTGATGAAGATCT
         66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT

              
       1214 TA
        131 TA

                                   *                                         
       1216 TACAAACTTCATTTAGCCCTGCAACTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
          1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT

                                *                    *       *               
       1281 TCACCACATCAGGAAACTTCAGCTGCAGCTGCTGCCGACACAGACTGGCTTGTTGATGAAGATCT
         66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT

              
       1346 TA
        131 TA

                                                                             
       1348 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
          1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT

                                                *   *    *                   
       1413 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCAACATGGACAGGCCTGTTGAT-AAGGATC
         66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAA-GATC

               
       1477 TTA
        130 TTA

                                                                             
       1480 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
          1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT

                                *                                            
       1545 TCACCACATCAGGAAACTTCAGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
         66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT

              
       1610 TA
        131 TA

                                                          *                  
       1612 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCTAATGGCTATTCTGGAAGT
          1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT

            *                                       **                       
       1677 GCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACATTGACTGGCCTGTTGATGAAGATCT
         66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT

              
       1742 TA
        131 TA

                 
       1744 TACAA
          1 TACAA

       1749 GCTTTCTTTA


Statistics
Matches: 510,  Mismatches: 21, Indels: 4
        0.95            0.04        0.01

Matches are distributed among these distances:
 131    2  0.00
 132  506  0.99
 133    2  0.00

ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27


Consensus pattern (132 bp):   
TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
TA

Done.