Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02040.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4734
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29


Found at i:1582 original size:15 final size:15

Alignment explanation


    Indices: 1562--1591  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1552 AAAAAAGTCT

                           
       1562 GTATGTTGTAATGAA
          1 GTATGTTGTAATGAA

                           
       1577 GTATGTTGTAATGAA
          1 GTATGTTGTAATGAA

       1592 CTTGAAACTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40


Consensus pattern (15 bp):   
GTATGTTGTAATGAA

Found at i:3583 original size:21 final size:24

Alignment explanation


    Indices: 3534--3586  Score: 88
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       3524 GGAGAGGGCT

                                    
       3534 GCTGCAGAGGCTCGAGAAAGAGCA
          1 GCTGCAGAGGCTCGAGAAAGAGCA

                           *       *
       3558 GCTGCAGAGGCTCGACAAAGAGCT
          1 GCTGCAGAGGCTCGAGAAAGAGCA

                 
       3582 GCTGC
          1 GCTGC

       3587 TTCTGCAAGT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.28, C:0.25, G:0.36, T:0.11


Consensus pattern (24 bp):   
GCTGCAGAGGCTCGAGAAAGAGCA
Done.