Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01718.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1048
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34


Found at i:60 original size:6 final size:6

Alignment explanation


    Indices: 28--81  Score: 58
    Period size: 6  Copynumber: 9.3  Consensus size: 6

         18 TTAAACCCTC

                     *      *                         *            
         28 CTTTCT CTCTCT CTCTCT CTTTCT CTTTCT CTTTC- ATTTCT -TTTCT
          1 CTTTCT CTTTCT CTTTCT CTTTCT CTTTCT CTTTCT CTTTCT CTTTCT

            *        
         74 TTTTCT CT
          1 CTTTCT CT

         82 CCCACAAGTT


Statistics
Matches: 42,  Mismatches: 4, Indels: 4
        0.84            0.08        0.08

Matches are distributed among these distances:
   5    9  0.21
   6   33  0.79

ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65


Consensus pattern (6 bp):   
CTTTCT
Done.