Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02058.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3034
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35


Found at i:2261 original size:21 final size:21

Alignment explanation


    Indices: 2237--2277  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2227 TCATCCCAGC

                                  
       2237 AACCCCAG-ACTCTAACCCATT
          1 AACCCCAGCA-TCTAACCCATT

                 *              
       2258 AACCCTAGCATCTAACCCAT
          1 AACCCCAGCATCTAACCCAT

       2278 CAAGGCTAGT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21   17  0.94
  22    1  0.06

ACGTcount: A:0.34, C:0.41, G:0.05, T:0.20


Consensus pattern (21 bp):   
AACCCCAGCATCTAACCCATT
Done.