Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02059.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1854
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32


Found at i:1807 original size:18 final size:17

Alignment explanation


    Indices: 1784--1817  Score: 59
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1774 AGTAAGGTGG

                              
       1784 GAAAAAAATTAGAAAGAT
          1 GAAAAAAA-TAGAAAGAT

                            
       1802 GAAAAAAATAGAAAGA
          1 GAAAAAAATAGAAAGA

       1818 AAGATGCATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17    8  0.50
  18    8  0.50

ACGTcount: A:0.71, C:0.00, G:0.18, T:0.12


Consensus pattern (17 bp):   
GAAAAAAATAGAAAGAT
Done.