Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02095.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2024
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29


Found at i:387 original size:222 final size:222

Alignment explanation


    Indices: 1--429  Score: 849
    Period size: 222  Copynumber: 1.9  Consensus size: 222

                                                                             
          1 CAGCTCCTTTTGCAGTTGTCTTCTATGCAACGGCTATAGATTAACTTGCAATGCAGTCTCTTAAA
          1 CAGCTCCTTTTGCAGTTGTCTTCTATGCAACGGCTATAGATTAACTTGCAATGCAGTCTCTTAAA

                                                                            *
         66 TGGCGAAAACATCTTAAACCTCTGCTCTTAGCCTGCAAAGACAAGAAACCCATAGCAAAAATTCT
         66 TGGCGAAAACATCTTAAACCTCTGCTCTTAGCCTGCAAAGACAAGAAACCCATAGCAAAAATTCA

                                                                             
        131 CGCCTTGATGATCCAAACCGGCCATAAAAACTCCGTTGGCAATCTTATAGCATCTTATGCCCGAG
        131 CGCCTTGATGATCCAAACCGGCCATAAAAACTCCGTTGGCAATCTTATAGCATCTTATGCCCGAG

                                       
        196 TTGGTGATATATACCATTTTTAGAGTG
        196 TTGGTGATATATACCATTTTTAGAGTG

                                                                             
        223 CAGCTCCTTTTGCAGTTGTCTTCTATGCAACGGCTATAGATTAACTTGCAATGCAGTCTCTTAAA
          1 CAGCTCCTTTTGCAGTTGTCTTCTATGCAACGGCTATAGATTAACTTGCAATGCAGTCTCTTAAA

                                                                             
        288 TGGCGAAAACATCTTAAACCTCTGCTCTTAGCCTGCAAAGACAAGAAACCCATAGCAAAAATTCA
         66 TGGCGAAAACATCTTAAACCTCTGCTCTTAGCCTGCAAAGACAAGAAACCCATAGCAAAAATTCA

                                                                             
        353 CGCCTTGATGATCCAAACCGGCCATAAAAACTCCGTTGGCAATCTTATAGCATCTTATGCCCGAG
        131 CGCCTTGATGATCCAAACCGGCCATAAAAACTCCGTTGGCAATCTTATAGCATCTTATGCCCGAG

                        
        418 TTGGTGATATAT
        196 TTGGTGATATAT

        430 TGTCAGCTCG


Statistics
Matches: 206,  Mismatches: 1, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 222  206  1.00

ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29


Consensus pattern (222 bp):   
CAGCTCCTTTTGCAGTTGTCTTCTATGCAACGGCTATAGATTAACTTGCAATGCAGTCTCTTAAA
TGGCGAAAACATCTTAAACCTCTGCTCTTAGCCTGCAAAGACAAGAAACCCATAGCAAAAATTCA
CGCCTTGATGATCCAAACCGGCCATAAAAACTCCGTTGGCAATCTTATAGCATCTTATGCCCGAG
TTGGTGATATATACCATTTTTAGAGTG
Done.