Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02100.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4640
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:4118 original size:105 final size:105

Alignment explanation


    Indices: 3988--4198  Score: 359
    Period size: 105  Copynumber: 2.0  Consensus size: 105

       3978 ACTTCCAATC

                                                       *           *         
       3988 AGCGAACTTTAGCCCTTTATGATGGCAACGATCCCAGCGTGGAGTCTGAACCCGATGAAACATTG
          1 AGCGAACTTTAGCCCTTTATGATGGCAACGATCCCAGCGTGGAATCTGAACCCGAGGAAACATTG

                                                    
       4053 GCAGCTCTGAAAAGCAAAATGAAACCAAAATCTAAAAGTG
         66 GCAGCTCTGAAAAGCAAAATGAAACCAAAATCTAAAAGTG

                              * *                **                          
       4093 AGCGAACTTTAGCCCTTTGTTATGGCAACGATCCCAGTTTGGAATCTGAACCCGAGGAAACATTG
          1 AGCGAACTTTAGCCCTTTATGATGGCAACGATCCCAGCGTGGAATCTGAACCCGAGGAAACATTG

                                         *          
       4158 GCAGCTCTGAAAAGCAAAATGAAACCAAACTCTAAAAGTG
         66 GCAGCTCTGAAAAGCAAAATGAAACCAAAATCTAAAAGTG

             
       4198 A
          1 A

       4199 CGGTAAGAAG


Statistics
Matches: 99,  Mismatches: 7, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
 105   99  1.00

ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21


Consensus pattern (105 bp):   
AGCGAACTTTAGCCCTTTATGATGGCAACGATCCCAGCGTGGAATCTGAACCCGAGGAAACATTG
GCAGCTCTGAAAAGCAAAATGAAACCAAAATCTAAAAGTG
Done.