Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02107.M5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7625
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29


Found at i:2946 original size:25 final size:25

Alignment explanation


    Indices: 2912--2961  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2902 GATTATAAGT

                                     
       2912 TAAAATTTAAATCTAAATGCATATG
          1 TAAAATTTAAATCTAAATGCATATG

                *                    
       2937 TAAAGTTTAAATCTAAATGCATATG
          1 TAAAATTTAAATCTAAATGCATATG

       2962 GTCTTTGGAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.46, C:0.08, G:0.10, T:0.36


Consensus pattern (25 bp):   
TAAAATTTAAATCTAAATGCATATG
Done.