Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02123.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4832
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31


Found at i:4685 original size:14 final size:14

Alignment explanation


    Indices: 4668--4699  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       4658 AAGGGGGTGG

                          
       4668 TTTTTT-TTT-TTC
          1 TTTTTTCTTTGTTC

                          
       4680 TTTTTTCTTTGTTC
          1 TTTTTTCTTTGTTC

                  
       4694 TTTTTT
          1 TTTTTT

       4700 GCTGGGTTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  12    6  0.33
  13    3  0.17
  14    9  0.50

ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88


Consensus pattern (14 bp):   
TTTTTTCTTTGTTC
Done.