Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02124.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1315
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29


Found at i:1202 original size:4 final size:4

Alignment explanation


    Indices: 1189--1218  Score: 53
    Period size: 4  Copynumber: 7.8  Consensus size: 4

       1179 TATATTAGTA

                                                  
       1189 TATC -ATC TATC TATC TATC TATC TATC TAT
          1 TATC TATC TATC TATC TATC TATC TATC TAT

       1219 ATATAGTAGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   3    3  0.12
   4   22  0.88

ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50


Consensus pattern (4 bp):   
TATC

Done.