Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02125.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3313
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26


Found at i:236 original size:33 final size:33

Alignment explanation


    Indices: 194--263  Score: 115
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        184 TCTGATCACC

                               *              
        194 AGGTATTGAAATGAATGGAGTTCAGCA-AAGGAA
          1 AGGTATTGAAATGAATGGAATTCAGCACAA-GAA

                                             
        227 AGGTATTGAAATGAATGGAATTCAGCACAAGAA
          1 AGGTATTGAAATGAATGGAATTCAGCACAAGAA

                
        260 AGGT
          1 AGGT

        264 CAGAATATTG


Statistics
Matches: 35,  Mismatches: 1, Indels: 2
        0.92            0.03        0.05

Matches are distributed among these distances:
  33   33  0.94
  34    2  0.06

ACGTcount: A:0.43, C:0.07, G:0.29, T:0.21


Consensus pattern (33 bp):   
AGGTATTGAAATGAATGGAATTCAGCACAAGAA
Done.