Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02125.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3184
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26


Found at i:105 original size:33 final size:33

Alignment explanation


    Indices: 63--134  Score: 119
    Period size: 33  Copynumber: 2.2  Consensus size: 33

         53 TAACCAGAGA

                                 *            
         63 AAAGGTATTGAAATGAATGGAGTTCAGCA-AAGG
          1 AAAGGTATTGAAATGAATGGAATTCAGCACAA-G

                                             
         96 AAAGGTATTGAAATGAATGGAATTCAGCACAAG
          1 AAAGGTATTGAAATGAATGGAATTCAGCACAAG

                  
        129 AAAGGT
          1 AAAGGT

        135 CAGAATATTG


Statistics
Matches: 37,  Mismatches: 1, Indels: 2
        0.93            0.03        0.05

Matches are distributed among these distances:
  33   35  0.95
  34    2  0.05

ACGTcount: A:0.44, C:0.07, G:0.28, T:0.21


Consensus pattern (33 bp):   
AAAGGTATTGAAATGAATGGAATTCAGCACAAG
Done.