Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02138.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 468

Length: 781
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29


Found at i:584 original size:12 final size:12

Alignment explanation


    Indices: 567--593  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        557 GGTGATTTTA

                        
        567 TGGAGCAGAACT
          1 TGGAGCAGAACT

                        
        579 TGGAGCAGAACT
          1 TGGAGCAGAACT

               
        591 TGG
          1 TGG

        594 GTGATTTTAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.30, C:0.15, G:0.37, T:0.19


Consensus pattern (12 bp):   
TGGAGCAGAACT
Done.