Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01728.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4721
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29


Found at i:2481 original size:222 final size:222

Alignment explanation


    Indices: 2095--2523  Score: 705
    Period size: 222  Copynumber: 1.9  Consensus size: 222

       2085 ATAGAAGTTG

                       *       *                       *         *           
       2095 AAGGCATTTCTTATATGGTTACACCTGATACAAATTGCAAACATAAAATTTTGGTGAAAGAAACA
          1 AAGGCATTTCTGATATGGTAACACCTGATACAAATTGCAAACAAAAAATTTTGATGAAAGAAACA

                           *               *           *  *                  
       2160 CCTGGAAAACTTTCATTAGATTTAGAGCAGCTGCAAGACCCTGCATGTTCCCAGGAATTGCAGCC
         66 CCTGGAAAACTTTCACTAGATTTAGAGCAGCAGCAAGACCCTGAATATTCCCAGGAATTGCAGCC

                            *                      *                         
       2225 TTCAGAAGCATTTGCTGATGTTGCTGTTGAAATGAATGATGGATCTGACACAATGAATCAAACTG
        131 TTCAGAAGCATTTGCTAATGTTGCTGTTGAAATGAATGACGGATCTGACACAATGAATCAAACTG

                                       
       2290 GTGACAGCTACAATAACAGTGATGTTA
        196 GTGACAGCTACAATAACAGTGATGTTA

                                      *  *       *  *                     *  
       2317 AAGGCATTTCTGATATGGTAACACCTTATGCAAATTGTAAGCAAAAAATTTTGATGAAAGAAGCA
          1 AAGGCATTTCTGATATGGTAACACCTGATACAAATTGCAAACAAAAAATTTTGATGAAAGAAACA

                             *                                      *        
       2382 CCTGGAAAACTTTCACTGGATTTAGAGCAGCAGCAAGACCCTGAATATTCCCAGGATTTGCAGCC
         66 CCTGGAAAACTTTCACTAGATTTAGAGCAGCAGCAAGACCCTGAATATTCCCAGGAATTGCAGCC

                                                                             
       2447 TTCAGAAGCATTTGCTAATGTTGCTGTTGAAATGAATGACGGATCTGACACAATGAATCAAACTG
        131 TTCAGAAGCATTTGCTAATGTTGCTGTTGAAATGAATGACGGATCTGACACAATGAATCAAACTG

                        
       2512 GTGACAGCTACA
        196 GTGACAGCTACA

       2524 GTCATAATGA


Statistics
Matches: 190,  Mismatches: 17, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
 222  190  1.00

ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27


Consensus pattern (222 bp):   
AAGGCATTTCTGATATGGTAACACCTGATACAAATTGCAAACAAAAAATTTTGATGAAAGAAACA
CCTGGAAAACTTTCACTAGATTTAGAGCAGCAGCAAGACCCTGAATATTCCCAGGAATTGCAGCC
TTCAGAAGCATTTGCTAATGTTGCTGTTGAAATGAATGACGGATCTGACACAATGAATCAAACTG
GTGACAGCTACAATAACAGTGATGTTA
Done.