Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g02146.F11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5152
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35


Found at i:4113 original size:17 final size:18

Alignment explanation


    Indices: 4087--4120  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       4077 TCGCTGATGG

                 *            
       4087 CCCTTTATTTT-TTTGTT
          1 CCCTTGATTTTCTTTGTT

                             
       4104 CCCTTGATTTTCTTTGT
          1 CCCTTGATTTTCTTTGT

       4121 AGGTTTCTGG


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17   10  0.67
  18    5  0.33

ACGTcount: A:0.06, C:0.21, G:0.09, T:0.65


Consensus pattern (18 bp):   
CCCTTGATTTTCTTTGTT
Done.